#!/bin/sh
# autopkgtest check: Check if fastaq tool can be executed
# Author: Sascha Steinbiss <sascha@steinbiss.name>

WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
cd $WORKDIR
cat <<EOF > infile.fasta
>test
CAGTCGATGCGAGCCGGCTACGA
EOF

fastaq reverse_complement infile.fasta -